Great! You now have a full curve. Interesting that you lost some speed with the hammer polishing. Did you lube it, and if so with what? Excessive lube can sure lead to jumpy numbers. You may need to adjust things depending on that, but in general it might just need a while to settle down, so you can always just shoot it some more and try again.
But the important thing is that you now know where you stand - throw out the first two shots, and if you ignore the jumps for now you can see that have a pretty good tight curve there (think big picture and ignore the spikes since those may go away on their own - if not, we will help track it down).
It looks like your gun wants to be filled to close to 3200 psi for a good shot string - we have seen a lot of the Gen 2s coming from the factory this way. I'm guessing that you don't want to fill that high, so you will probably want to tune for a lower fill pressure. It is time to read the tuning guide - here is a link to a re-write that Ray did on it and it so much better to read than the original:
viewtopic.php?f=14&t=2577Once you read it and get to the point you want to dive in, we can help more. In the mean time, nothing wrong with shooting shorter strings from a lower fill pressure.